Janga, Sarath: search on Z-Library

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1

Database of RNA binding protein expression and disease dynamics (READ DB)

Hashemikhabir, Seyedsasan, Neelamraju, Yaseswini, Janga, Sarath Chandra

Journal:

Year:

2015

Language:

english

File:

PDF, 467 KB

english, 2015

2

Ten Simple Rules for Organizing a Scientific Meeting

Corpas, Manuel, Gehlenborg, Nils, Janga, Sarath Chandra, Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 70 KB

english, 2008

3

Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects

Sarmah, Swapnalee, Srivastava, Rajneesh, McClintick, Jeanette N., Janga, Sarath C., Edenberg, Howard J., Marrs, James A.

Journal:

Scientific Reports

Year:

2020

File:

PDF, 1.86 MB

2020

4

Epitranscriptomic Code and Its Alterations in Human Disease

Kadumuri, Rajashekar Varma, Janga, Sarath Chandra

Journal:

Trends in Molecular Medicine

Year:

2018

Language:

english

File:

PDF, 2.55 MB

english, 2018

5

Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans

Srivastava, Rajneesh, Daulatabad, Swapna Vidhur, Srivastava, Mansi, Janga, Sarath Chandra

Journal:

International Journal of Molecular Sciences

Year:

2020

File:

PDF, 8.02 MB

2020

6

Functional organisation of Escherichia coli transcriptional regulatory network

Agustino Martínez-Antonio, Sarath Chandra Janga, Denis Thieffry

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.54 MB

english, 2008

7

Diary of the Week

Srivastava, Rajneesh, Micanovic, Radmila, El-Achkar, Tarek M., Janga, Sarath Chandra

Journal:

Year:

1961

Language:

english

File:

PDF, 167 KB

english, 1961

8

The Network of Transcriptional Interactions Imposes Linear Constrains in the Genome

Menchaca-Mendez, Ricardo, Janga, Sarath Chandra, Collado-Vides, Julio

Journal:

Omics A Journal of Integrative Biology

Year:

2005

Language:

english

File:

PDF, 219 KB

english, 2005

9

Expression levels of SF3B3 correlate with prognosis and endocrine resistance in estrogen receptor-positive breast cancer

Gökmen-Polar, Yesim, Neelamraju, Yaseswini, Goswami, Chirayu P, Gu, Xiaoping, Nallamothu, Gouthami, Janga, Sarath Chandra, Badve, Sunil

Journal:

Modern Pathology

Year:

2015

Language:

english

File:

PDF, 962 KB

english, 2015

10

SliceIt: A genome-wide resource and visualization tool to design CRISPR/Cas9 screens for editing protein-RNA interaction sites in the human genome

Vemuri, Sasank, Srivastava, Rajneesh, Mir, Quoseena, Hashemikhabir, Seyedsasan, Dong, X. Charlie, Janga, Sarath Chandra

Journal:

Year:

2019

Language:

english

File:

PDF, 5.32 MB

english, 2019

11

Highlights from the Fourth International Society for Computational Biology Student Council Symposium at the Sixteenth Annual International Conference on Intelligent Systems for Molecular Biology

Lucia Peixoto, Nils Gehlenborg, Sarath Chandra Janga

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 193 KB

english, 2008

12

Genome-wide analysis of mRNA decay patterns during earlyDrosophiladevelopment

Stefan Thomsen, Simon Anders, Sarath Chandra Janga, Wolfgang Huber…

Journal:

Year:

2010

Language:

english

File:

PDF, 4.54 MB

english, 2010

13

Extensive cross-talk and global regulators identified from an analysis of the integrated transcriptional and signaling network in Escherichia coli

Antiqueira, Lucas, Janga, Sarath Chandra, Costa, Luciano da Fontoura

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 3.35 MB

english, 2012

14

The human RBPome: From genes and proteins to human disease

Neelamraju, Yaseswini, Hashemikhabir, Seyedsasan, Janga, Sarath Chandra

Journal:

Journal of Proteomics

Year:

2015

Language:

english

File:

PDF, 2.71 MB

english, 2015

15

Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations

Srivastava, Rajneesh, Budak, Gungor, Dash, Soma, Lachke, Salil A., Janga, Sarath Chandra

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 6.02 MB

english, 2017

16

Operons and the effect of genome redundancy in deciphering functional relationships using phylogenetic profiles

Gabriel Moreno-Hagelsieb, Sarath Chandra Janga

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 186 KB

english, 2008

17

Interplay between Posttranscriptional and Posttranslational Interactions of RNA-Binding Proteins

Nitish Mittal, Tanja Scherrer, André P. Gerber, Sarath Chandra Janga

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 353 KB

english, 2011

18

Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli

Agustino Martínez-Antonio, Sarath Chandra Janga, Heladia Salgado, Julio Collado-Vides

Journal:

Trends in Microbiology

Year:

2006

Language:

english

File:

PDF, 410 KB

english, 2006

19

Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance

Yildirim, Suleyman, Yeoman, Carl J, Janga, Sarath Chandra, Thomas, Susan M, Ho, Mengfei, Leigh, Steven R, Consortium, Primate Microbiome, White, Bryan A, Wilson, Brenda A, Stumpf, Rebecca M

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 1.42 MB

english, 2014

20

Differential Expression of miRNAs in Non-tumor Liver Tissue of Patients with Hepatocellular Cancer due to Non-Alcoholic Steatohepatitis Cirrhosis

Liang, Tiebing, Vuppalanchi, Raj, Williams, Kent Edward, Sarasani, Vishal, Chandra Janga, Sarath, Chalasani, Naga P.

Journal:

Clinical Gastroenterology and Hepatology

Year:

2016

Language:

english

File:

PDF, 509 KB

english, 2016

21

Structure and organization of drug-target networks: insights from genomic approaches for drug discovery

Janga, Sarath Chandra, Tzakos, Andreas

Journal:

Molecular BioSystems

Year:

2009

Language:

english

File:

PDF, 2.00 MB

english, 2009

22

RNA-binding proteins in eye development and disease: implication of conserved RNA granule components

Dash, Soma, Siddam, Archana D., Barnum, Carrie E., Janga, Sarath Chandra, Lachke, Salil A.

Journal:

Wiley Interdisciplinary Reviews: RNA

Year:

2016

Language:

english

File:

PDF, 4.55 MB

english, 2016

23

Seten: A tool for systematic identification and comparison of processes, phenotypes and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles

Budak, Gungor, Srivastava, Rajneesh, Janga, Sarath Chandra

Journal:

Year:

2017

Language:

english

File:

PDF, 2.91 MB

english, 2017

24

Splicing factor ESRP1 controls ER‐positive breast cancer by altering metabolic pathways

Gökmen‐Polar, Yesim, Neelamraju, Yaseswini, Goswami, Chirayu P, Gu, Yuan, Gu, Xiaoping, Nallamothu, Gouthami, Vieth, Edyta, Janga, Sarath C, Ryan, Michael, Badve, Sunil S

Journal:

Year:

2019

File:

PDF, 3.80 MB

2019

25

Prediction and evolution of transcription factors and their evolutionary families in prokaryotes

Sarath Chandra Janga

Journal:

BMC Systems Biology

Year:

2007

Language:

english

File:

PDF, 147 KB

english, 2007

26

Paracrine IL-2 Is Required for Optimal Type 2 Effector Cytokine Production

Olson, Matthew R., Ulrich, Benjamin J., Hummel, Sarah A., Khan, Ibrahim, Meuris, Brice, Cherukuri, Yesesri, Dent, Alexander L., Janga, Sarath Chandra, Kaplan, Mark H.

Journal:

The Journal of Immunology

Year:

2017

Language:

english

File:

PDF, 1.54 MB

english, 2017

27

A conserved enhancer regulates Il9 expression in multiple lineages

Koh, Byunghee, Abdul Qayum, Amina, Srivastava, Rajneesh, Fu, Yongyao, Ulrich, Benjamin J., Janga, Sarath Chandra, Kaplan, Mark H.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.47 MB

english, 2018

28

SliceIt: A genome-wide resource and visualization tool to design CRISPR/Cas9 screens for editing protein-RNA interaction sites in the human genome

Vemuri, Sasank, Srivastava, Rajneesh, Mir, Quoseena, Hashemikhabir, Seyedsasan, Dong, X. Charlie, Janga, Sarath Chandra

Journal:

Year:

2019

File:

PDF, 5.32 MB

2019

29

Early transcriptome profile of goat peripheral blood mononuclear cells (PBMCs) infected with peste des petits ruminant's vaccine virus (Sungri/96) revealed induction of antiviral response in an interferon independent manner

Manjunath, Siddappa, Saxena, Shikha, Mishra, Bina, Santra, Lakshman, Sahu, Amit Ranjan, Wani, Sajad Ahmed, Tiwari, Ashok Kumar, Mishra, Bishnu Prasad, Singh, Raj Kumar, Janga, Sarath Chandra, Kumar, G

Journal:

Research in Veterinary Science

Year:

2019

File:

PDF, 2.94 MB

2019

30

Early transcriptome profile of goat peripheral blood mononuclear cells (PBMCs) infected with peste des petits ruminant's vaccine virus (Sungri/96) revealed induction of antiviral response in an interferon independent manner

Manjunath, Siddappa, Saxena, Shikha, Mishra, Bina, Santra, Lakshman, Sahu, Amit Ranjan, Wani, Sajad Ahmed, Tiwari, Ashok Kumar, Mishra, Bishnu Prasad, Singh, Raj Kumar, Janga, Sarath Chandra, Kumar, G

Journal:

Research in Veterinary Science

Year:

2019

Language:

english

File:

PDF, 2.94 MB

english, 2019

31

Structure and evolution of gene regulatory networks in microbial genomes

Sarath Chandra Janga, J. Collado-Vides

Journal:

Research in Microbiology

Year:

2007

Language:

english

File:

PDF, 445 KB

english, 2007

32

Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches

Yesesri Cherukuri,Sarath Chandra Janga

Journal:

Year:

2016

Language:

english

File:

PDF, 1.15 MB

english, 2016

33

Conservation of transcriptional sensing systems in prokaryotes: A perspective from Escherichia coli

Heladia Salgado, Agustino Martínez-Antonio, Sarath Chandra Janga

Journal:

Year:

2007

Language:

english

File:

PDF, 1.45 MB

english, 2007

34

Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome

Zhao, Huiying, Yang, Yuedong, Janga, Sarath Chandra, Kao, C. Cheng, Zhou, Yaoqi

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 247 KB

english, 2014

35

Scaling relationship in the gene content of transcriptional machinery in bacteria

Pérez-Rueda, Ernesto, Janga, Sarath Chandra, Martínez-Antonio, Agustino

Journal:

Molecular BioSystems

Year:

2009

Language:

english

File:

PDF, 2.23 MB

english, 2009

36

Cover Image, Volume 7, Issue 4

Dash, Soma, Siddam, Archana D., Barnum, Carrie E., Janga, Sarath Chandra, Lachke, Salil A.

Journal:

Wiley Interdisciplinary Reviews: RNA

Year:

2016

File:

PDF, 897 KB

2016

37

Differential miRNA Expression in Cells and Matrix Vesicles in Vascular Smooth Muscle Cells from Rats with Kidney Disease

Chaturvedi, Praneet, Chen, Neal X., O’Neill, Kalisha, McClintick, Jeanette N., Moe, Sharon M., Janga, Sarath Chandra, Wijnen, Andre van

Journal:

Year:

2015

Language:

english

File:

PDF, 3.49 MB

english, 2015

38

Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data

Eller, Ryan J., Janga, Sarath C., Walsh, Susan

Journal:

BMC Bioinformatics

Year:

2019

File:

PDF, 1.68 MB

2019

39

Eukaryotic gene regulation in three dimensions and its impact on genome evolution

M Madan Babu, Sarath Chandra Janga, Ines de Santiago, Ana Pombo

Journal:

Current Opinion in Genetics & Development

Year:

2008

Language:

english

File:

PDF, 647 KB

english, 2008

40

Network-based approaches for linking metabolism with environment

Sarath Chandra Janga, M Madan Babu

Journal:

Year:

2008

Language:

english

File:

PDF, 135 KB

english, 2008

41

Dissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks

Nishtala, Sneha, Neelamraju, Yaseswini, Janga, Sarath Chandra

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.03 MB

english, 2016

42

Identification and analysis of DNA-binding transcription factors inBacillus subtilisand other Firmicutes- a genomic approach

Samadhi Moreno-Campuzano, Sarath Chandra Janga, Ernesto Pérez-Rueda

Journal:

Year:

2006

Language:

english

File:

PDF, 654 KB

english, 2006

43

Genomic analysis of host – Peste des petits ruminants vaccine viral transcriptome uncovers transcription factors modulating immune regulatory pathways

Manjunath, Siddappa, Kumar, Gandham, Mishra, Bishnu, Mishra, Bina, Sahoo, Aditya, Joshi, Chaitanya G, Tiwari, Ashok K, Rajak, Kaushal, Janga, Sarath

Journal:

Veterinary Research

Year:

2015

Language:

english

File:

PDF, 2.46 MB

english, 2015

44

Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data

Eller, Ryan J., Janga, Sarath C., Walsh, Susan

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.68 MB

english, 2019

45

New Twists in Detecting mRNA Modification Dynamics

Anreiter, Ina, Mir, Quoseena, Simpson, Jared T., Janga, Sarath C., Soller, Matthias

Journal:

Trends in Biotechnology

Year:

2020

File:

PDF, 1.24 MB

2020

46

RNA Editing in Pathogenesis of Cancer

Baysal, Bora E., Sharma, Shraddha, Hashemikhabir, Seyedsasan, Janga, Sarath Chandra

Journal:

Cancer Research

Year:

2017

Language:

english

File:

PDF, 514 KB

english, 2017

47

Long Non-Coding RNA Expression Levels Modulate Cell-Type-Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins

Porto, Felipe Wendt, Daulatabad, Swapna Vidhur, Janga, Sarath Chandra

Journal:

Year:

2019

Language:

english

File:

PDF, 28.56 MB

english, 2019

48

Highlights from the Third International Society for Computational Biology Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology

Nils Gehlenborg, Manuel Corpas, Sarath Chandra Janga

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 197 KB

english, 2007

49

Plasticity of transcriptional machinery in bacteria is increased by the repertoire of regulatory families

Sarath Chandra Janga, Ernesto Pérez-Rueda

Journal:

Computational Biology and Chemistry

Year:

2009

Language:

english

File:

PDF, 1012 KB

english, 2009

50

Su1460 microRNAs for the Differentiation of Mucinous Pancreatic Cysts in EUS Guided Fluid Sampling

Al-Haddad, Mohammad A., Janga, Sarath Chandra, Nishtala, Sneha, Ipe, Joseph, Bhatia, Puja, Skaar, Todd

Journal:

Gastroenterology

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

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